Trackers in active droplet simulations

This example shows how to analyze droplet trajectories. Note that the simulation requires the optional numba-scipy package!

Traceback (most recent call last):
  File "/home/docs/checkouts/readthedocs.org/user_builds/emulsim/checkouts/stable/examples/droplets_trackers.py", line 10, in <module>
    import numba_scipy  # raises an error if the module is not available
    ^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'numba_scipy'

import numba_scipy  # raises an error if the module is not available
import numpy as np

from droplets import SphericalDroplet
from pde import ScalarField, UnitGrid

import emulsim

# set up state
grid = UnitGrid([32, 32], periodic=True)
background = emulsim.ScalarFieldElement.from_field(ScalarField(grid, 0.005))
droplet_data = [
    SphericalDroplet(position=grid.get_random_point(), radius=np.random.uniform(0.1, 4))
    for _ in range(10)
]
droplets = emulsim.SphericalDropletsElement.from_droplets(droplet_data)
state = emulsim.State({"background": background, "droplets": droplets})

# set up simulation
reaction_flux = "0.001 - 0.01 * c"
simulation = emulsim.Simulation(state)
simulation.add_actor(
    "background", emulsim.ReactionDiffusionActor({"reaction_flux": reaction_flux})
)
droplet_actor = emulsim.SphericalDropletActor(
    {"mean_reaction_inside": -0.01, "reaction_outside": reaction_flux}
)
simulation.add_actor(("droplets", "background"), droplet_actor)

# run simulation
tracker = emulsim.DropletElementTracker("droplets", interrupts=10)
simulation.run(t_range=1e3, tracker=tracker)

# show droplet tracks
tracker.droplet_tracks.plot()